IL_8CBJ_091
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_091 not in the Motif Atlas
- Geometric match to IL_4V88_471
- Geometric discrepancy: 0.1472
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8CBJ|1|2|U|1669
8CBJ|1|2|G|1670
8CBJ|1|2|A|1671
8CBJ|1|2|G|1672
*
8CBJ|1|2|C|1729
8CBJ|1|2|A|1730
8CBJ|1|2|A|1731
8CBJ|1|2|A|1732
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6-B
- Chain I
- 40S ribosomal protein S8-A
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