IL_8CBJ_104
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_104 not in the Motif Atlas
- Geometric match to IL_8C3A_507
- Geometric discrepancy: 0.125
- The information below is about IL_8C3A_507
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.1
- Basepair signature
- cWW-tSH-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CBJ|1|2|G|1540
8CBJ|1|2|G|1541
8CBJ|1|2|G|1542
8CBJ|1|2|A|1543
8CBJ|1|2|U|1544
8CBJ|1|2|A|1545
*
8CBJ|1|2|U|1566
8CBJ|1|2|U|1567
8CBJ|1|2|C|1568
8CBJ|1|2|A|1569
8CBJ|1|2|A|1570
8CBJ|1|2|C|1571
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain S
- 40S ribosomal protein S18-A
- Chain T
- 40S ribosomal protein S19-A
- Chain l
- non-specific serine/threonine protein kinase
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