3D structure

PDB id
8CCS (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
1.97 Å

Loop

Sequence
UGACGAAG*UCGAA
Length
13 nucleotides
Bulged bases
8CCS|1|AA|C|1391
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CCS_062 not in the Motif Atlas
Homologous match to IL_8C3A_063
Geometric discrepancy: 0.0627
The information below is about IL_8C3A_063
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.5
Basepair signature
cWW-cWW-tSS-tSH-tHS-cWW-tHS
Number of instances in this motif group
32

Unit IDs

8CCS|1|AA|U|1388
8CCS|1|AA|G|1389
8CCS|1|AA|A|1390
8CCS|1|AA|C|1391
8CCS|1|AA|G|1392
8CCS|1|AA|A|1393
8CCS|1|AA|A|1394
8CCS|1|AA|G|1395
*
8CCS|1|AA|U|1415
8CCS|1|AA|C|1416
8CCS|1|AA|G|1417
8CCS|1|AA|A|1418
8CCS|1|AA|A|1419

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain B
60S ribosomal protein L17-A
Chain CC
5.8S ribosomal RNA; 5.8S rRNA
Chain GG
60S ribosomal protein L4-A
Chain II
60S ribosomal protein L6-A
Chain K
60S ribosomal protein L26-A
Chain Q
60S ribosomal protein L32

Coloring options:


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