IL_8CCS_074

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

8CCS|1|AA|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_074 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0656

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8CCS|1|AA|U|1694
8CCS|1|AA|U|1695
8CCS|1|AA|A|1696
8CCS|1|AA|A|1697
8CCS|1|AA|C|1698
*
8CCS|1|AA|G|1747
8CCS|1|AA|G|1748
8CCS|1|AA|A|1749
8CCS|1|AA|A|1750
8CCS|1|AA|G|1751
8CCS|1|AA|A|1752

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L34-A

Chain W

60S ribosomal protein L38