IL_8CCS_080

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8CCS|1|AA|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_080 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.0545

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8CCS|1|AA|A|1901
8CCS|1|AA|G|1902
8CCS|1|AA|U|1903
8CCS|1|AA|C|1904
8CCS|1|AA|G|1905
8CCS|1|AA|G|1906
*
8CCS|1|AA|C|2333
8CCS|1|AA|U|2334
8CCS|1|AA|G|2335
8CCS|1|AA|U|2336

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A