IL_8CCS_098

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CAUAG*UAUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_098 not in the Motif Atlas

Homologous match to IL_8C3A_102

Geometric discrepancy: 0.4244

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CCS|1|AA|C|2444
8CCS|1|AA|A|2445
8CCS|1|AA|U|2446
8CCS|1|AA|A|2447
8CCS|1|AA|G|2448
*
8CCS|1|AA|U|2499
8CCS|1|AA|A|2500
8CCS|1|AA|U|2501
8CCS|1|AA|A|2502
8CCS|1|AA|G|2503

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain e

40S ribosomal protein S1-A