IL_8CCS_132
3D structure
- PDB id
- 8CCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.97 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 8CCS|1|AA|A|3180, 8CCS|1|AA|A|3186, 8CCS|1|AA|U|3207, 8CCS|1|AA|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CCS_132 not in the Motif Atlas
- Homologous match to IL_5TBW_124
- Geometric discrepancy: 0.0905
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8CCS|1|AA|U|3179
8CCS|1|AA|A|3180
8CCS|1|AA|C|3181
8CCS|1|AA|G|3182
8CCS|1|AA|A|3183
8CCS|1|AA|A|3184
8CCS|1|AA|U|3185
8CCS|1|AA|A|3186
8CCS|1|AA|A|3187
8CCS|1|AA|G|3188
*
8CCS|1|AA|C|3204
8CCS|1|AA|G|3205
8CCS|1|AA|C|3206
8CCS|1|AA|U|3207
8CCS|1|AA|G|3208
8CCS|1|AA|A|3209
8CCS|1|AA|A|3210
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain E
- 60S ribosomal protein L20-A
- Chain II
- 60S ribosomal protein L6-A
- Chain LL
- 60S ribosomal protein L9-A
- Chain PP
- 60S ribosomal protein L14-A
- Chain R
- 60S ribosomal protein L33-A
Coloring options: