IL_8CCS_165

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8CCS|1|c|U|144, 8CCS|1|c|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_165 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1634

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8CCS|1|c|G|142
8CCS|1|c|G|143
8CCS|1|c|U|144
8CCS|1|c|A|145
8CCS|1|c|U|146
8CCS|1|c|A|147
8CCS|1|c|A|148
8CCS|1|c|C|149
*
8CCS|1|c|G|165
8CCS|1|c|C|166
8CCS|1|c|U|167
8CCS|1|c|A|168
8CCS|1|c|A|169
8CCS|1|c|U|170
8CCS|1|c|A|171
8CCS|1|c|C|172

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain j

40S ribosomal protein S6-A