IL_8CCS_188

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

GGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_188 not in the Motif Atlas

Geometric match to IL_4V88_427

Geometric discrepancy: 0.2126

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8CCS|1|c|G|641
8CCS|1|c|G|642
8CCS|1|c|G|643
*
8CCS|1|c|C|691
8CCS|1|c|C|692
8CCS|1|c|U|693

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain k

40S ribosomal protein S7-A

Chain y

40S ribosomal protein S22-A