IL_8CCS_195

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8CCS|1|c|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_195 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.2502

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8CCS|1|c|G|868
8CCS|1|c|A|869
8CCS|1|c|C|870
*
8CCS|1|c|G|957
8CCS|1|c|U|958
8CCS|1|c|U|959
8CCS|1|c|U|960

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S27-A

Chain p

40S ribosomal protein S13