IL_8CCS_258

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

8CCS|1|c|OMU|1269

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CCS_258 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1411

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8CCS|1|c|G|1268
8CCS|1|c|OMU|1269
8CCS|1|c|G|1270
*
8CCS|1|c|C|1440
8CCS|1|c|C|1441

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 5

HLJ1_G0030400.mRNA.1.CDS.1

Chain n

40S ribosomal protein S10-A