IL_8CDL_045
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- UUCCG*UGA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_045 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.3008
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8CDL|1|AA|U|1014
8CDL|1|AA|U|1015
8CDL|1|AA|C|1016
8CDL|1|AA|C|1017
8CDL|1|AA|G|1018
*
8CDL|1|AA|U|1034
8CDL|1|AA|G|1035
8CDL|1|AA|A|1036
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Bb
- Transfer RNA; tRNA
- Chain HH
- 60S ribosomal protein L5
- Chain MM
- 60S ribosomal protein L10
- Chain NN
- 60S ribosomal protein L11-A
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