IL_8CDL_070

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

8CDL|1|AA|U|1629, 8CDL|1|AA|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_070 not in the Motif Atlas

Homologous match to IL_5TBW_066

Geometric discrepancy: 0.1534

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8CDL|1|AA|U|1627
8CDL|1|AA|C|1628
8CDL|1|AA|U|1629
8CDL|1|AA|U|1630
8CDL|1|AA|C|1631
*
8CDL|1|AA|G|1811
8CDL|1|AA|G|1812
8CDL|1|AA|A|1813
8CDL|1|AA|A|1814
8CDL|1|AA|U|1815
8CDL|1|AA|A|1816

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L27-A