IL_8CDL_075
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- UUAAC*GGAAGA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_075 not in the Motif Atlas
- Homologous match to IL_8C3A_077
- Geometric discrepancy: 0.0701
- The information below is about IL_8C3A_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69313.1
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CDL|1|AA|U|1694
8CDL|1|AA|U|1695
8CDL|1|AA|A|1696
8CDL|1|AA|A|1697
8CDL|1|AA|C|1698
*
8CDL|1|AA|G|1747
8CDL|1|AA|G|1748
8CDL|1|AA|A|1749
8CDL|1|AA|A|1750
8CDL|1|AA|G|1751
8CDL|1|AA|A|1752
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain S
- 60S ribosomal protein L34-A
- Chain W
- 60S ribosomal protein L38
Coloring options: