IL_8CDL_081

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8CDL|1|AA|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_081 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.1085

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8CDL|1|AA|A|1901
8CDL|1|AA|G|1902
8CDL|1|AA|U|1903
8CDL|1|AA|C|1904
8CDL|1|AA|G|1905
8CDL|1|AA|G|1906
*
8CDL|1|AA|C|2333
8CDL|1|AA|U|2334
8CDL|1|AA|G|2335
8CDL|1|AA|U|2336

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A