IL_8CDL_086

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8CDL|1|AA|U|2159, 8CDL|1|AA|U|2175, 8CDL|1|AA|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_086 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0766

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8CDL|1|AA|C|2156
8CDL|1|AA|G|2157
8CDL|1|AA|A|2158
8CDL|1|AA|U|2159
8CDL|1|AA|G|2160
8CDL|1|AA|G|2161
*
8CDL|1|AA|U|2173
8CDL|1|AA|G|2174
8CDL|1|AA|U|2175
8CDL|1|AA|U|2176
8CDL|1|AA|G|2177
8CDL|1|AA|A|2178
8CDL|1|AA|C|2179
8CDL|1|AA|G|2180

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain b

60S ribosomal protein L43-A

Chain c

Small subunit ribosomal RNA; SSU rRNA