IL_8CDL_090
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_090 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.0843
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CDL|1|AA|U|2211
8CDL|1|AA|C|2212
8CDL|1|AA|A|2213
8CDL|1|AA|A|2214
8CDL|1|AA|A|2215
8CDL|1|AA|G|2216
8CDL|1|AA|U|2217
*
8CDL|1|AA|A|2228
8CDL|1|AA|A|2229
8CDL|1|AA|C|2230
8CDL|1|AA|C|2231
8CDL|1|AA|A|2232
8CDL|1|AA|A|2233
8CDL|1|AA|G|2234
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Cc
- Transfer RNA; tRNA
- Chain U
- 60S ribosomal protein L36-A
- Chain a
- 60S ribosomal protein L42-A
Coloring options: