IL_8CDL_126

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8CDL|1|AA|U|3056, 8CDL|1|AA|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_126 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.0777

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8CDL|1|AA|U|3054
8CDL|1|AA|U|3055
8CDL|1|AA|U|3056
8CDL|1|AA|U|3057
8CDL|1|AA|U|3058
8CDL|1|AA|G|3059
*
8CDL|1|AA|C|3084
8CDL|1|AA|G|3085
8CDL|1|AA|A|3086
8CDL|1|AA|A|3087
8CDL|1|AA|G|3088

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain I

60S ribosomal protein L24-A

Chain P

60S ribosomal protein L31-A