IL_8CDL_128

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8CDL|1|AA|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_128 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.0596

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8CDL|1|AA|A|3103
8CDL|1|AA|U|3104
8CDL|1|AA|U|3105
8CDL|1|AA|A|3106
8CDL|1|AA|U|3107
*
8CDL|1|AA|A|3127
8CDL|1|AA|G|3128
8CDL|1|AA|A|3129
8CDL|1|AA|A|3130
8CDL|1|AA|U|3131

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain LL

60S ribosomal protein L9-A

Chain Y

Ubiquitin-60S ribosomal protein L40