IL_8CDL_141

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8CDL|1|AA|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_141 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.0719

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

8CDL|1|AA|U|3332
8CDL|1|AA|G|3333
8CDL|1|AA|U|3334
8CDL|1|AA|A|3335
8CDL|1|AA|A|3336
8CDL|1|AA|G|3337
*
8CDL|1|AA|C|3367
8CDL|1|AA|U|3368
8CDL|1|AA|G|3369
8CDL|1|AA|A|3370
8CDL|1|AA|G|3371

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain FF

60S ribosomal protein L3

Chain I

60S ribosomal protein L24-A

Chain P

60S ribosomal protein L31-A