IL_8CDL_151
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_151 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0612
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
8CDL|1|CC|A|44
8CDL|1|CC|C|45
8CDL|1|CC|G|46
8CDL|1|CC|C|47
8CDL|1|CC|A|48
8CDL|1|CC|G|49
8CDL|1|CC|C|50
8CDL|1|CC|G|51
8CDL|1|CC|A|52
8CDL|1|CC|A|53
8CDL|1|CC|A|54
8CDL|1|CC|U|55
8CDL|1|CC|G|56
8CDL|1|CC|C|57
8CDL|1|CC|G|58
8CDL|1|CC|A|59
8CDL|1|CC|U|60
8CDL|1|CC|A|61
8CDL|1|CC|C|62
8CDL|1|CC|G|63
8CDL|1|CC|U|64
*
8CDL|1|CC|A|96
8CDL|1|CC|A|97
8CDL|1|CC|U|98
8CDL|1|CC|C|99
8CDL|1|CC|U|100
Current chains
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 60S ribosomal protein L25
- Chain T
- 60S ribosomal protein L35-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
Coloring options: