IL_8CDL_154

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCA*UA

Length

5 nucleotides

Bulged bases

8CDL|1|c|C|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_154 not in the Motif Atlas

Homologous match to IL_4V88_384

Geometric discrepancy: 0.4392

The information below is about IL_4V88_384

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8CDL|1|c|U|24
8CDL|1|c|C|25
8CDL|1|c|A|26
*
8CDL|1|c|U|600
8CDL|1|c|A|601

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A