IL_8CDL_161
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 8CDL|1|c|U|66, 8CDL|1|c|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_161 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.1682
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CDL|1|c|U|64
8CDL|1|c|A|65
8CDL|1|c|U|66
8CDL|1|c|A|67
8CDL|1|c|A|68
8CDL|1|c|G|69
*
8CDL|1|c|U|82
8CDL|1|c|G|83
8CDL|1|c|A|84
8CDL|1|c|A|85
8CDL|1|c|A|86
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S24-A
- Chain j
- 40S ribosomal protein S6-A
Coloring options: