IL_8CDL_165

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8CDL|1|c|U|144, 8CDL|1|c|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_165 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1813

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8CDL|1|c|G|142
8CDL|1|c|G|143
8CDL|1|c|U|144
8CDL|1|c|A|145
8CDL|1|c|U|146
8CDL|1|c|A|147
8CDL|1|c|A|148
8CDL|1|c|C|149
*
8CDL|1|c|G|165
8CDL|1|c|C|166
8CDL|1|c|U|167
8CDL|1|c|A|168
8CDL|1|c|A|169
8CDL|1|c|U|170
8CDL|1|c|A|171
8CDL|1|c|C|172

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain j

40S ribosomal protein S6-A