IL_8CDL_203
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_203 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0911
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8CDL|1|c|G|1111
8CDL|1|c|G|1112
8CDL|1|c|A|1113
8CDL|1|c|G|1114
8CDL|1|c|U|1115
8CDL|1|c|A|1116
8CDL|1|c|U|1117
8CDL|1|c|G|1118
*
8CDL|1|c|U|1129
8CDL|1|c|G|1130
8CDL|1|c|A|1131
8CDL|1|c|A|1132
8CDL|1|c|A|1133
8CDL|1|c|C|1134
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain Z
- 60S ribosomal protein L41-A
- Chain z
- 40S ribosomal protein S23-A
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