IL_8CDL_218

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

8CDL|1|c|A|1346, 8CDL|1|c|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDL_218 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2154

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8CDL|1|c|A|1345
8CDL|1|c|A|1346
8CDL|1|c|U|1347
8CDL|1|c|A|1348
*
8CDL|1|c|U|1377
8CDL|1|c|U|1378
8CDL|1|c|C|1379
8CDL|1|c|U|1380

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain s

40S ribosomal protein S16-A

Chain w

40S ribosomal protein S20