IL_8CDL_225
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 8CDL|1|c|C|1637, 8CDL|1|c|A|1766
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_225 not in the Motif Atlas
- Homologous match to IL_4V88_463
- Geometric discrepancy: 0.1161
- The information below is about IL_4V88_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CDL|1|c|C|1636
8CDL|1|c|C|1637
8CDL|1|c|G|1638
*
8CDL|1|c|C|1764
8CDL|1|c|A|1765
8CDL|1|c|A|1766
8CDL|1|c|G|1767
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain Cc
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain q
- 40S ribosomal protein S14-A
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