3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
G(OMC)CC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CDL_226 not in the Motif Atlas
Geometric match to IL_4V88_464
Geometric discrepancy: 0.1169
The information below is about IL_4V88_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8CDL|1|c|G|1638
8CDL|1|c|OMC|1639
8CDL|1|c|C|1640
8CDL|1|c|C|1641
*
8CDL|1|c|G|1760
8CDL|1|c|U|1761
8CDL|1|c|A|1762
8CDL|1|c|A|1763
8CDL|1|c|C|1764

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain Cc
Transfer RNA; tRNA
Chain Dd
Messenger RNA
Chain Z
60S ribosomal protein L41-A

Coloring options:


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