IL_8CDL_226
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- G(OMC)CC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDL_226 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1169
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CDL|1|c|G|1638
8CDL|1|c|OMC|1639
8CDL|1|c|C|1640
8CDL|1|c|C|1641
*
8CDL|1|c|G|1760
8CDL|1|c|U|1761
8CDL|1|c|A|1762
8CDL|1|c|A|1763
8CDL|1|c|C|1764
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Cc
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain Z
- 60S ribosomal protein L41-A
Coloring options: