IL_8CDR_055
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8CDR|1|AA|C|1196, 8CDR|1|AA|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDR_055 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0805
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8CDR|1|AA|G|1194
8CDR|1|AA|A|1195
8CDR|1|AA|C|1196
8CDR|1|AA|A|1197
8CDR|1|AA|C|1198
8CDR|1|AA|C|1199
8CDR|1|AA|A|1200
8CDR|1|AA|C|1201
8CDR|1|AA|A|1202
8CDR|1|AA|A|1203
8CDR|1|AA|A|1204
8CDR|1|AA|A|1205
*
8CDR|1|AA|U|1299
8CDR|1|AA|G|1300
8CDR|1|AA|A|1301
8CDR|1|AA|A|1302
8CDR|1|AA|A|1303
8CDR|1|AA|A|1304
8CDR|1|AA|U|1305
8CDR|1|AA|G|1306
8CDR|1|AA|G|1307
8CDR|1|AA|A|1308
8CDR|1|AA|U|1309
8CDR|1|AA|G|1310
8CDR|1|AA|G|1311
8CDR|1|AA|C|1312
8CDR|1|AA|G|1313
8CDR|1|AA|C|1314
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain FF
- 60S ribosomal protein L3
- Chain JJ
- 60S ribosomal protein L7-A
- Chain MM
- 60S ribosomal protein L10
- Chain R
- 60S ribosomal protein L33-A
- Chain Y
- Ubiquitin-60S ribosomal protein L40
Coloring options: