IL_8CDR_076
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8CDR|1|AA|U|1716, 8CDR|1|AA|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDR_076 not in the Motif Atlas
- Homologous match to IL_8C3A_079
- Geometric discrepancy: 0.1155
- The information below is about IL_8C3A_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CDR|1|AA|C|1711
8CDR|1|AA|G|1712
8CDR|1|AA|G|1713
8CDR|1|AA|A|1714
8CDR|1|AA|A|1715
8CDR|1|AA|U|1716
8CDR|1|AA|U|1717
*
8CDR|1|AA|G|1727
8CDR|1|AA|G|1728
8CDR|1|AA|A|1729
8CDR|1|AA|G|1730
8CDR|1|AA|A|1731
8CDR|1|AA|U|1732
8CDR|1|AA|G|1733
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L19-A
- Chain L
- 60S ribosomal protein L27-A
- Chain O
- 60S ribosomal protein L30
- Chain S
- 60S ribosomal protein L34-A
- Chain b
- 60S ribosomal protein L43-A
- Chain p
- 40S ribosomal protein S13
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