IL_8CDR_099

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CAUAG*UAUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDR_099 not in the Motif Atlas

Homologous match to IL_8C3A_102

Geometric discrepancy: 0.4348

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CDR|1|AA|C|2444
8CDR|1|AA|A|2445
8CDR|1|AA|U|2446
8CDR|1|AA|A|2447
8CDR|1|AA|G|2448
*
8CDR|1|AA|U|2499
8CDR|1|AA|A|2500
8CDR|1|AA|U|2501
8CDR|1|AA|A|2502
8CDR|1|AA|G|2503

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L36-A

Chain e

40S ribosomal protein S1-A