IL_8CDR_167

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8CDR|1|c|U|144, 8CDR|1|c|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDR_167 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.188

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8CDR|1|c|G|142
8CDR|1|c|G|143
8CDR|1|c|U|144
8CDR|1|c|A|145
8CDR|1|c|U|146
8CDR|1|c|A|147
8CDR|1|c|A|148
8CDR|1|c|C|149
*
8CDR|1|c|G|165
8CDR|1|c|C|166
8CDR|1|c|U|167
8CDR|1|c|A|168
8CDR|1|c|A|169
8CDR|1|c|U|170
8CDR|1|c|A|171
8CDR|1|c|C|172

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain j

40S ribosomal protein S6-A