IL_8CDR_228
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDR_228 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.1291
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CDR|1|c|G|1480
8CDR|1|c|C|1481
8CDR|1|c|C|1482
8CDR|1|c|A|1483
8CDR|1|c|G|1484
8CDR|1|c|C|1485
8CDR|1|c|G|1486
8CDR|1|c|A|1487
*
8CDR|1|c|U|1519
8CDR|1|c|U|1520
8CDR|1|c|G|1521
8CDR|1|c|U|1522
8CDR|1|c|G|1523
8CDR|1|c|A|1524
8CDR|1|c|A|1525
8CDR|1|c|A|1526
8CDR|1|c|C|1527
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain g
- RPS3 isoform 1
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
- Chain v
- 40S ribosomal protein S19-A
- Chain w
- 40S ribosomal protein S20
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