IL_8CDR_246
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8CDR|1|AA|A|933, 8CDR|1|AA|G|937
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDR_246 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0591
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CDR|1|AA|OMG|805
8CDR|1|AA|A|806
8CDR|1|AA|A2M|807
8CDR|1|AA|A|808
8CDR|1|AA|G|809
*
8CDR|1|AA|C|931
8CDR|1|AA|U|932
8CDR|1|AA|A|933
8CDR|1|AA|G|934
8CDR|1|AA|U|935
8CDR|1|AA|A|936
8CDR|1|AA|G|937
8CDR|1|AA|C|938
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain GG
- 60S ribosomal protein L4-A
- Chain M
- 60S ribosomal protein L28
- Chain OO
- 60S ribosomal protein L13-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain V
- 60S ribosomal protein L37-A
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