IL_8CDR_262
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8CDR|1|c|A|1227, 8CDR|1|c|G|1228, 8CDR|1|c|A|1256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDR_262 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.4193
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8CDR|1|c|A|1224
8CDR|1|c|U|1225
8CDR|1|c|A|1226
8CDR|1|c|A|1227
8CDR|1|c|G|1228
8CDR|1|c|G|1229
8CDR|1|c|A|1230
8CDR|1|c|U|1231
8CDR|1|c|U|1232
8CDR|1|c|G|1233
*
8CDR|1|c|C|1252
8CDR|1|c|U|1253
8CDR|1|c|U|1254
8CDR|1|c|G|1255
8CDR|1|c|A|1256
8CDR|1|c|U|1257
8CDR|1|c|U|1258
8CDR|1|c|U|1259
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain 8
- Ubiquitin-40S ribosomal protein S31
- Chain n
- 40S ribosomal protein S10-A
Coloring options: