IL_8CDU_009

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8CDU|1|A|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_009 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1259

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8CDU|1|A|G|146
8CDU|1|A|G|147
8CDU|1|A|A|148
8CDU|1|A|U|149
8CDU|1|A|A|150
8CDU|1|A|A|151
8CDU|1|A|C|152
*
8CDU|1|A|G|167
8CDU|1|A|C|168
8CDU|1|A|U|169
8CDU|1|A|A|170
8CDU|1|A|A|171
8CDU|1|A|U|172
8CDU|1|A|A|173
8CDU|1|A|C|174

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S20