IL_8CDU_010
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUUAG*CGACGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8CDU|1|A|U|252, 8CDU|1|A|C|288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDU_010 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.1016
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CDU|1|A|C|250
8CDU|1|A|A|251
8CDU|1|A|U|252
8CDU|1|A|U|253
8CDU|1|A|A|254
8CDU|1|A|G|255
*
8CDU|1|A|C|285
8CDU|1|A|G|286
8CDU|1|A|A|287
8CDU|1|A|C|288
8CDU|1|A|G|289
8CDU|1|A|A|290
8CDU|1|A|U|291
8CDU|1|A|G|292
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
Coloring options: