IL_8CDU_028
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 8CDU|1|A|A|674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDU_028 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.0901
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8CDU|1|A|A|671
8CDU|1|A|A|672
8CDU|1|A|G|673
8CDU|1|A|A|674
8CDU|1|A|G|675
*
8CDU|1|A|U|749
8CDU|1|A|G|750
8CDU|1|A|G|751
8CDU|1|A|U|752
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain O
- 30S ribosomal protein S15
- Chain T
- 30S ribosomal protein S6
- Chain U
- 30S ribosomal protein S18
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