IL_8CDU_034

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_034 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3987

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8CDU|1|A|C|941
8CDU|1|A|C|942
8CDU|1|A|G|943
*
8CDU|1|A|C|1393
8CDU|1|A|G|1394
8CDU|1|A|G|1395
8CDU|1|A|G|1396

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S7