IL_8CDU_046
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AACAAAG*CACAAAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CDU_046 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.3316
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CDU|1|A|A|1256
8CDU|1|A|A|1257
8CDU|1|A|C|1258
8CDU|1|A|A|1259
8CDU|1|A|A|1260
8CDU|1|A|A|1261
8CDU|1|A|G|1262
*
8CDU|1|A|C|1293
8CDU|1|A|A|1294
8CDU|1|A|C|1295
8CDU|1|A|A|1296
8CDU|1|A|A|1297
8CDU|1|A|A|1298
8CDU|1|A|U|1299
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S7
- Chain J
- 30S ribosomal protein S9
- Chain K
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
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