IL_8CDU_049

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: ACC,GGU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_049 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.1935

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8CDU|1|A|A|1272
8CDU|1|A|C|1273
8CDU|1|A|C|1274
*
8CDU|1|A|G|1279
8CDU|1|A|G|1280
8CDU|1|A|U|1281

Current chains

Chain A

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S19