IL_8CDU_053

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8CDU|1|A|C|1064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CDU_053 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.2693

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8CDU|1|A|U|1062
8CDU|1|A|G|1063
8CDU|1|A|C|1064
8CDU|1|A|A|1065
8CDU|1|A|U|1066
*
8CDU|1|A|A|1213
8CDU|1|A|U|1214
8CDU|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S3

Chain N

30S ribosomal protein S14