IL_8CEH_042
3D structure
- PDB id
- 8CEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.05 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8CEH|1|AA|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CEH_042 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.0735
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8CEH|1|AA|G|999
8CEH|1|AA|C|1000
8CEH|1|AA|G|1001
8CEH|1|AA|A|1002
8CEH|1|AA|A|1003
8CEH|1|AA|U|1004
*
8CEH|1|AA|A|1046
8CEH|1|AA|A|1047
8CEH|1|AA|A|1048
8CEH|1|AA|C|1049
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L21-A
- Chain HH
- 60S ribosomal protein L5
- Chain MM
- 60S ribosomal protein L10
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