IL_8CEH_064

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

GUAGU(A2M)(OMG)C*GCGAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEH_064 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.2625

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8CEH|1|AA|G|1444
8CEH|1|AA|U|1445
8CEH|1|AA|A|1446
8CEH|1|AA|G|1447
8CEH|1|AA|U|1448
8CEH|1|AA|A2M|1449
8CEH|1|AA|OMG|1450
8CEH|1|AA|C|1451
*
8CEH|1|AA|G|2353
8CEH|1|AA|C|2354
8CEH|1|AA|G|2355
8CEH|1|AA|A|2356
8CEH|1|AA|A|2357
8CEH|1|AA|A|2358
8CEH|1|AA|C|2359

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain GG

60S ribosomal protein L4-A