IL_8CEH_085

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8CEH|1|AA|U|2159, 8CEH|1|AA|U|2175, 8CEH|1|AA|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEH_085 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0662

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8CEH|1|AA|C|2156
8CEH|1|AA|G|2157
8CEH|1|AA|A|2158
8CEH|1|AA|U|2159
8CEH|1|AA|G|2160
8CEH|1|AA|G|2161
*
8CEH|1|AA|U|2173
8CEH|1|AA|G|2174
8CEH|1|AA|U|2175
8CEH|1|AA|U|2176
8CEH|1|AA|G|2177
8CEH|1|AA|A|2178
8CEH|1|AA|C|2179
8CEH|1|AA|G|2180

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain b

60S ribosomal protein L43-A

Chain c

Small subunit ribosomal RNA; SSU rRNA