IL_8CEH_196

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

8CEH|1|c|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEH_196 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.2531

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8CEH|1|c|G|868
8CEH|1|c|A|869
8CEH|1|c|C|870
*
8CEH|1|c|G|957
8CEH|1|c|U|958
8CEH|1|c|U|959
8CEH|1|c|U|960

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S27-A

Chain O

60S ribosomal protein L30

Chain p

40S ribosomal protein S13