IL_8CEH_246
3D structure
- PDB id
- 8CEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.05 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8CEH|1|AA|A|933, 8CEH|1|AA|G|937
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CEH_246 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0546
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8CEH|1|AA|OMG|805
8CEH|1|AA|A|806
8CEH|1|AA|A2M|807
8CEH|1|AA|A|808
8CEH|1|AA|G|809
*
8CEH|1|AA|C|931
8CEH|1|AA|U|932
8CEH|1|AA|A|933
8CEH|1|AA|G|934
8CEH|1|AA|U|935
8CEH|1|AA|A|936
8CEH|1|AA|G|937
8CEH|1|AA|C|938
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain GG
- 60S ribosomal protein L4-A
- Chain M
- 60S ribosomal protein L28
- Chain OO
- 60S ribosomal protein L13-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain V
- 60S ribosomal protein L37-A
Coloring options: