IL_8CEP_021

3D structure

PDB id

8CEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Round2 30S head (no antibiotic)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEP_021 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.0822

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8CEP|1|A|G|450
8CEP|1|A|A|451
8CEP|1|A|A|452
8CEP|1|A|G|453
8CEP|1|A|G|454
8CEP|1|A|G|455
*
8CEP|1|A|C|477
8CEP|1|A|A|478
8CEP|1|A|U|479
8CEP|1|A|U|480
8CEP|1|A|G|481
8CEP|1|A|A|482
8CEP|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16