IL_8CEU_021

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEU_021 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0762

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8CEU|1|a|U|703
8CEU|1|a|G|704
8CEU|1|a|A|705
8CEU|1|a|A|706
8CEU|1|a|G|707
*
8CEU|1|a|U|724
8CEU|1|a|G|725
8CEU|1|a|G|726
8CEU|1|a|A|727
8CEU|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain G

Capreomycin IA

Chain c

Large ribosomal subunit protein uL2