IL_8CEU_033

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

GGGGU*ACUUAC

Length

11 nucleotides

Bulged bases

8CEU|1|a|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEU_033 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3417

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8CEU|1|a|G|880
8CEU|1|a|G|881
8CEU|1|a|G|882
8CEU|1|a|G|883
8CEU|1|a|U|884
*
8CEU|1|a|A|892
8CEU|1|a|C|893
8CEU|1|a|U|894
8CEU|1|a|U|895
8CEU|1|a|A|896
8CEU|1|a|C|897

Current chains

Chain a

23S rRNA

Nearby chains